What Apps Integrate With QuickBooks Online

QuickBooks Online is one of the most powerful accounting platforms for small and mid-sized businesses. But it becomes truly efficient when your other business apps connect and sync automatically. If you're searching what apps integrate with QuickBooks Online, this guide highlights all major categories — and how QBIS Sync helps you automate everything without manual work.

Why Integration Matters — And Where QBIS Helps

Most native integrations only sync basic data. QBIS fills the gap by offering deep, real-time, customized sync across ecommerce, payments, CRM, payroll, and inventory systems.

With QBIS, you get:

✔ Automated order, customer, invoice, and payment sync

✔ Custom mapping for SKUs, fees, taxes, and deposits

✔ Support for QuickBooks Online + QuickBooks Desktop

✔ Dedicated onboarding + 1:1 support

Now let’s explore the apps that connect seamlessly with QuickBooks Online.

1. Payment Apps That Integrate With QuickBooks Online

Payment gateways are essential for collecting money and tracking revenue.

Popular integrations:

• PayPal
• Stripe
• Square
• Razorpay

With QBIS:

You can sync transaction-level details, including fees, refunds, and deposits — giving you cleaner books than native apps.

2. Ecommerce & Marketplace Apps

Ecommerce stores generate hundreds of orders daily. Manual entry becomes impossible.

Top ecommerce integrations:

• Shopify
• WooCommerce
• Amazon Seller
• Etsy

QBIS Advantage:

Unlike basic plugins, QBIS handles:

• Order sync
• Full settlement breakdown
• Multi-channel inventory
• Tax mapping
• Payout reconciliation

Perfect for high-volume sellers.

3. CRM & Customer Management Apps

Customer data must stay consistent across your sales and accounting systems.

Integrations include:

• Salesforce
• Zoho CRM
• HubSpot
• Pipedrive

QBIS Benefit:

QBIS syncs invoices, estimates, payments, and customer records between CRM and QuickBooks Online — reducing errors and improving billing.

4. Payroll & HR Apps

Payroll sync prevents incorrect expenses and tax issues.

Apps that integrate with QBO:

• Gusto
• ADP
• Paychex
• QuickBooks Time

QBIS Benefit:

QBIS ensures every payroll entry hits the correct accounts and departments, making reporting accurate and audit-ready.

5. Inventory & Manufacturing Apps

Inventory accuracy is key for businesses selling physical products.

Top integrations:

• Cin7
• DEAR Systems
• SOS Inventory
• Katana MRP

QBIS Benefit:

QBIS gives you end-to-end product, inventory, and cost-of-goods sync, which native integrations often miss.

6. Time Tracking & Project Management Apps

For service-based businesses, time directly impacts billing.

Integrations include:

• Asana
• Trello
• Harvest
• Clockify

QBIS Benefit:

Timesheets, project hours, and job costs sync automatically so invoicing becomes effortless.

Why Businesses Choose QBIS for QuickBooks Online Integrations

• Real-time syncing
• No manual spreadsheets
• Handles complex data (fees, refunds, multi-channel)
• Dedicated support team
• Works with QuickBooks Online and Desktop
• Faster onboarding and zero downtime

If you’re exploring what apps integrate with QuickBooks Online, the answer is: nearly every tool your business uses. But to get clean, accurate, automated syncing, QBIS gives you the flexibility and automation that standard integrations can’t.